Migrating a medical & healthcare supplies store from WooCommerce to Shopify (2026)
How to migrate a medical supplies, healthcare, or wellness products WooCommerce store to Shopify — regulatory compliance, CE/FDA marking, prescription vs OTC, professional pricing, and payment processor eligibility.
Medical supplies and healthcare product stores range from professional clinical equipment distributors to consumer wellness retailers. All face heightened regulatory requirements for product data accuracy, claims compliance, and payment processing. Here's how to navigate this migration carefully.
Healthcare ecommerce categories (and complexity level)
- Mobility aids: Wheelchairs, walking frames, crutches, ramps — CE marking, NHS supply code, HCPCS codes
- Diagnostic equipment: Blood pressure monitors, glucometers, pulse oximeters — CE/FDA Class II
- Wound care: Dressings, bandages — medical device classification varies
- Continence products: Catheter, ostomy — often VAT-zero rated in UK; prescription items in some markets
- Orthotics and supports: Knee braces, back supports — Class I medical devices in EU/UK
- Clinical consumables: Gloves, gowns, syringes — PPE regulation post-COVID
- Optical: Reading glasses (OTC) vs prescription — very different regulatory handling
- Wellness/OTC: Pain relief, first aid, vitamins — consumer products, lowest regulatory barrier
- Prescription products: Only via licensed pharmacy — NOT standard ecommerce; requires regulatory approval to sell online
Regulatory compliance metafields
EU/UK medical device classification
product.metafields.medical.device_class(single_line_text) — "Class I", "Class IIa", "Class IIb", "Class III" (EU MDR 2017/745)product.metafields.medical.ce_marking(boolean) — CE marked (EU) or UKCA marked (UK post-Brexit)product.metafields.medical.ukca_marking(boolean)product.metafields.medical.notified_body(single_line_text) — Notified Body number for Class IIa+ devicesproduct.metafields.medical.registration_number(single_line_text) — MHRA UK or EUDAMED registrationproduct.metafields.medical.manufacturer(single_line_text) — Legal manufacturer name (may differ from brand)product.metafields.medical.country_of_origin(single_line_text)
US FDA classification
product.metafields.medical.fda_class(single_line_text) — "Class I", "Class II", "Class III"product.metafields.medical.fda_510k(single_line_text) — 510(k) clearance number for Class II devicesproduct.metafields.medical.fda_pma(single_line_text) — PMA approval number for Class III
Product identification codes
product.metafields.medical.hcpcs_code(single_line_text) — US: Healthcare Common Procedure Coding System code (for insurance reimbursement)product.metafields.medical.nhs_supply_code(single_line_text) — UK NHS Supply Chain codeproduct.metafields.medical.emdn_code(single_line_text) — EU EMDN nomenclature codeproduct.metafields.medical.gmdn_code(single_line_text) — Global Medical Device Nomenclature codeproduct.metafields.medical.latex_free(boolean) — critical for allergy-sensitive productsproduct.metafields.medical.sterile(boolean)product.metafields.medical.single_use(boolean)
VAT and tax classification (UK/EU)
product.metafields.medical.vat_zero_rated(boolean) — UK: many aids for disabled people are zero-rated VAT- Shopify tax overrides: configure zero-rate tax for eligible product types in Shopify Admin → Settings → Taxes → Tax overrides
- UK examples: incontinence products, mobility aids, prosthetics — zero-rated under VAT Act 1994 Schedule 8 Group 12
Prescription vs over-the-counter products
This is a critical distinction that affects what you can legally sell online:
Over-the-counter (OTC): standard ecommerce
- Pain relief (paracetamol, ibuprofen): standard retail, legal to sell online without pharmacy registration in most quantities
- Reading glasses: no prescription required for pre-made readers
- Diagnostic devices: blood pressure monitors, thermometers — OTC is fine
Prescription products: NOT standard ecommerce
- In the UK: prescription-only medicines require GPhC-registered online pharmacy
- In EU/US: similar pharmacy licensing requirements
- Prescription products on WooCommerce without pharmacy registration = regulatory risk. Migration is not the only issue — the WooCommerce store may already be operating illegally.
- If your WooCommerce store sold Rx products: consult regulatory counsel before migrating to Shopify
- Shopify cannot provide pharmacy compliance — this is a legal/regulatory matter, not a platform matter
Shopify Payments eligibility for medical products
Healthcare and medical products have specific Shopify Payments restrictions:
- Accepted: Mobility aids, wound care, OTC health products, first aid, medical consumables (non-pharmaceutical)
- Restricted / requires review: Dietary supplements with health claims, some Class II medical devices
- Prohibited: Prescription drugs, controlled substances, grey-market medical devices, unregistered medical devices making health claims
- Review Shopify Payments' prohibited business types list before migration
- If in doubt: Stripe (also has healthcare restrictions), PayPal, or specialist healthcare payment processors (Worldpay, Elavon)
Professional customer pricing (B2B healthcare)
Many medical supply companies serve both retail consumers and healthcare professionals at different prices:
- Healthcare professionals (NHS trusts, GP practices, nursing homes, care homes) at trade prices
- Consumer retail at higher prices (or consumer vs professional product variants)
- Customer tags: "healthcare-professional", "nhs-trust", "care-home", "pharmacy"
- Professional account application form: verify professional credentials before applying trade pricing
- Wholesale Club / Wholesale Gorilla for tag-based professional pricing
- Shopify Plus B2B for larger NHS trust or care home group contracts
Compliance content on product pages
Medical product pages legally require specific content:
- CE/UKCA marking visible on product images or as badge on product page
- "Consult your healthcare professional before use" — display for medical devices
- Instructions for use (IFU): PDF download link required for all medical devices in EU MDR
- Declaration of Conformity (DoC): some retailers link to the DoC document on product page
- Contraindications: who should NOT use this product — important for Class IIa+ devices
- Metafield:
product.metafields.medical.ifu_url(url) — Instructions for Use PDF - Metafield:
product.metafields.medical.doc_url(url) — Declaration of Conformity PDF
Delivery restrictions for medical products
- Temperature-sensitive products (some diagnostics, eye drops): require temperature-controlled shipping. Shopify can flag via metafield and shipping rules.
- International shipping: many medical devices require import licenses in target countries. Restrict to approved markets via Shopify Markets.
- Large mobility aids: bulky items (wheelchairs, hospital beds) require freight delivery. Use carrier-calculated shipping for accurate freight rates.
Medical store migration checklist
- Audit all products: classify OTC vs prescription. Remove or fence off any prescription products requiring pharmacy registration.
- Create medical regulatory metafields: device class, CE/UKCA, registration numbers, HCPCS/NHS codes
- Export VAT classification data from WooCommerce — identify all zero-rated products
- Configure Shopify tax overrides for zero-rated medical products
- Verify Shopify Payments eligibility for all product categories before migrating payment setup
- Set up professional pricing tier via customer tags + wholesale pricing app
- Upload IFU and DoC PDFs to Shopify Files; link via metafields
- Add CE/UKCA compliance badges to product page template (triggered by metafield boolean)
- Configure international market restrictions for markets where devices aren't registered
- Add "consult healthcare professional" disclaimer to Class II+ product template
- Test zero-rated VAT on checkout for eligible products
Healthcare ecommerce is one of the few categories where the migration itself should trigger a regulatory review, not just a technical review. If your WooCommerce store accumulated medical claims content over years of blog posts and product descriptions, migrating is the opportunity to audit those claims against current UK/EU/US advertising standards. MHRA's enforcement of medical device advertising has increased significantly — product description text that made it past WooCommerce without issue may attract regulatory attention on a freshly-relaunched, higher-visibility Shopify storefront.
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